Architectural factor of bacterial nucleoid, H-NS: overproduction and verification of its functional activity

  • У. С. Швырёва Shvyreva Uliana S. – PhD student in the laboratory of Functional genomics and cellular stress, Institute of Cell Biophysics RAS, Pushchino, Moscow region, e-mail: uliana.shvyreva@gmail.com
  • М. Н. Тутукина Tutukina Maria N. – PhD in Molecular biology, senior research scientist in the laboratory of Functional genomics and cellular stress, Institute of Cell Biophysics RAS, Pushchino, Moscow region, e-mail: maria@icb.psn.ru
  • О. Н. Озолинь Ozoline Olga N. – Dr.Sci., professor, Head of the laboratory of Functional genomics and cellular stress, Institute of Cell Biophysics RAS, Pushchino, Moscow region
Keywords: specific sorption of antibodies, electrophoresis, molecular cloning, nucleoid, RNA, HNS, E.coli, affinity chromatography

Abstract

The vector for overproduction of the H-NS protein has been constructed by means of molecular
cloning. Being one of the major structural proteins of bacterial nucleoid, it also regulates expression of some
genes. Resulting vector was transferred into E. coli BL21(DE3)∆hns strain and conditions optimal for
overproduction of the recombinant H-NS possessing six histidine residues on its C-terminal end were
estimated. Effective H-NS production was confirmed by electrophoretic fractionating of the proteins from
cell lysates. The correctness of his-tag positioning was testified by specific sorption of anti-his polyclonal
antibodies produced in rabbit. Functional activity of the protein was estimated by its ability to form specific
complexes with the DNA fragments containing multiple potential promoters for short RNA synthesis
(“promoter islands”). The method developed here enables one-step purification of H-NS protein using
affinity chromatography and allows investigating efficiency of H-NS binding to the DNA targets by detecting
complexes after specific sorption of anti-his antibodies to the his-tagged protein.

Downloads

Download data is not yet available.

References

1.Blattner F.R. et al., Science, 1997, Vol. 277,
pp. 1453-1462.
2.Ozoline O.N., Shavkunov K.S., Tutukina
M.N., Bulletin of Biotechnology, 2005, No 1,
pp. 56-65.
3.Lee H.J., Hong S.H., FEMS Microbiol Lett,
2012, Vol. 326(2), pp. 131-136. doi:
10.1111/j.1574-6968.2011.02441.x.
4.Shavkunov K.S., Masulis I.S., Tutukina
M.N. et al., Nucleic Acids Res, 2009, Vol. 37,
pp. 4919-4931. doi: 10.1093/nar/gkp490.
5.Glazunova O.A., Kiselev S.S., Shavkunov
K.S. et al., Math. Biol. Bioinf., 2014, Vol. 9 (2),
pp. 563-574. doi: 10.17537/2014.9.563.
6.Reppas N., Wade J., Church G., Struhl K.,
Mol. Cell, 2006, Vol. 24, pp. 747-757.
7.Taft RJ, Hawkins PG, Mattick JS et al.,
Epigenetics and chromatin, 2011, Vol. 4.
pp. 13.
8.Panyukov V.V., Ozoline O.N., PLoS One,
2013, Vol. 8(5):e62601. doi:
10.1371/journal.pone.0062601
9.Dorman C.J., Nat Rev Microbiol, 2004, Vol.
2(5), pp. 391-400.
10. Falconi M., Higgins P.N. et al., Mol.
Microbiol, 1992, Vol. 10, pp. 273-282.
11. Westra E.R. et al, Mol. Microbiol, 2009,
Vol. 77, pp. 1380-1393. doi:
10.1016/j.molcel.2012.03.018.
12. Dole S., Nagarajavel V., Schnetz K.,
Mol. Microbiol, 2004, Vol. 52 (2), pp. 589-600.
13. Dersch P., Schmidt K., Bremer E., Mol.
Microbiol, 1993, Vol. 8(5), pp. 875-889.
14. Schnetz K., Wang J.C., Nucleic Acids
Res, 1996, Vol. 24 (12), pp. 2422-2428.
15. Davis B.J., Ann. N.Y. Acad. Sci., 1994,
Vol. 121, pp. 404-427.
16. Igarashi K., Ishihama A., Cell, 1991,
Vol. 65, pp. 1015-1022.
17. Shindo H., Ohnuki A., Ginba H. et al.,
FEBS Lett., 1999, Vol. 455, pp. 63-69.
18. Potapova A.V., Ozoline O.N., Tutukina
M.N. Sorbtsionnye i khromatograficheskie
protsessy, 2014, Vol.14(3), pp. 537-543.
19. Panyukov V.V., Kiselev S.S., Shavkunov
K.S. et al., Math. Biol. Bioinf., 2013, Vol.
8:t12-t26. doi: 10.17537/2013.8.t12
20. Lang B., et al., Nucleic Acids Res, 2007,
Vol. 35, pp. 6330-6337.
21. Landick R., Wade J.T., Grainger D.C.,
Curr. Op. Microbiol, 2015, Vol. 24, pp. 53-59.
22. Arold S.T., Leonard P.G., Parkinson
G.N., Ladbury J.E., Proc Natl Acad Sci USA,
2010, Vol. 107, pp. 15728-15732. doi:
10.1073/pnas.1006966107
23. Hansen A-M., Chaerkady R., Sharma J.,
et al., PLoS Pathog, 2013, Vol. 9(6), e1003403.
doi:10.1371/journal.ppat.1003403
Published
2018-02-19
How to Cite
Швырёва, У. С., Тутукина, М. Н., & Озолинь, О. Н. (2018). Architectural factor of bacterial nucleoid, H-NS: overproduction and verification of its functional activity. Sorbtsionnye I Khromatograficheskie Protsessy, 15(3), 435-442. https://doi.org/10.17308/sorpchrom.2015.15/291